Pittsburgh Post-Gazette Article (Dec. 9, 2005)
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Software Tools
List of software developed by group members:
Alignment, Similarity, & Database Matching for DNA Motifs (STAMP)
- Shaun Mahony and Takis Benos (University of Pittsburgh)
Short Time-series Expression Miner (STEM)
- Jason Ernst, Ziv Bar-Joseph (Carnegie Mellon University)
- Analysis of Short Time-series using Rank Order preservation (ASTRO)
- Alain B.Tchagang, Thomas McGinnis, David Corcoran, Panayiotis V. Benos (University of Pittsburgh)
- Energy normalized LOGOs (enoLOGOS)
- Workman CT, Yin Y, Corcoran DL, Ideker T, Stormo GD, Benos PV (University of Pittsburgh)
- Energy normalized LOGOs of the C2H2 protein family (enoLOGOS-C2H2)
- Workman CT, Yin Y, Corcoran DL, Ideker T, Stormo GD, Benos PV (University of Pittsburgh)
- Footer image: finding mammalian transcription factor binding sites using phylogentic footprinting (Footer)
- Corcoran David et al. (University of Pittsburgh)